Publications

ML=Machine Learning/Statistics/Artificial Intelligence, BI=Healthcare/Biological Imaging/Bioinformatics, NS=Neuroscience
* Indicates equal contribution.

Selected Preprints and Abstracts

[ML, NS] A Nonconvex Framework for Structured Dynamic Covariance Recovery
Katherine Tsai, Mladen Kolar, Oluwasanmi Koyejo
Preprint, 2020
[preprint]

[ML] Quadratic Metric Elicitation with Application to Fairness
Gaurush Hiranandani, Jatin Mathur, Harikrishna Narasimhan and Oluwasanmi Koyejo
Preprint, 2020
[preprint]

[ML, BI] EMIXER: End-to-end Multimodal X-ray Generation via Self-supervision
Siddharth Biswal, Peiye Zhuang, Ayis Pyrros, Nasir Siddiqui, Sanmi Koyejo, Jimeng Sun.
Preprint, 2020
[preprint]

[ML] Consistent Classification with Generalized Metrics
Xiaoyan Wang, Ran Li, Bowei Yan, and Oluwasanmi Koyejo.
Preprint, 2019
[preprint]

[NS, BI] Informing Bayesian Functional Connectivity Modeling with Structural Connectivity Priors
Sameer Manchanda, Carolyn Murray, Sanmi Koyejo
Organization for Human Brain Mapping Annual Meeting (OHBM), 2019
[url]

[BI] Predicting Comorbidities Associated with COVID-19 Admissions from Frontal Radiographs Utilizing a Multipart Neural Network Classifier
A T Pyrros, N A Siddiqui, D A Forsyth, S Koyejo, A G Schwing, A E Flanders
Radiological Society of North America Annual Meeting (RSNA), 2020

[BI] Generative Neural Networks: Synthesizing a Complete Tomographic Study from a Single Frontal Radiograph
P. Cole, A. Chen, S. Sundararaman, A. Kadimisetty, N. A. Siddiqui, S. Koyejo, et. al.
Radiological Society of North America Annual Meeting (RSNA), 2019

[BI] Generative adversarial neural networks in the creation of synthetic chest radiographs: Can we fool the experts?
Ishan Deshpande, Alexander G. Schwing, Sanmi Koyejo, Nasir A. Siddiqui, Ayis T. Pyrros, and David A. Forsyth
Radiological Society of North America Annual Meeting (RSNA), 2018

Technical & Scientific Publications

[ML] Uncovering the Connections Between Adversarial Transferability and Knowledge Transferability
Kaizhao Liang, Jacky Y. Zhang, Oluwasanmi Koyejo and Bo Li
International Conference on Machine Learning (ICML), 2021
[preprint]

[ML] Optimizing Black-box Metrics with Iterative Example Weighting
Gaurush Hiranandani, Jatin Mathur, Oluwasanmi Koyejo, Mahdi Milani Fard, Harikrishna Narasimhan
International Conference on Machine Learning (ICML), 2021
[preprint]

[BI] Predicting prolonged hospitalization and supplemental oxygenation in patients with COVID-19 infection from ambulatory chest radiographs using deep learning Ayis Pyrros, Adam Eugene Flanders, Jorge Mario Rodriguez-Fernandez, Andrew Chen, Patrick Cole, Daniel Wenzke, Eric Hart, Samuel Harford, Jeanne Horowitz, Paul Nikolaidis, Nadir Muzaffar, Viveka Boddipalli, Jai Nebhrajani, Nasir Siddiqui, Melinda Willis, Houshang Darabi, Oluwasanmi Koyejo, and William Galanter
Academic Radiology, 2021
[DOI]

[ML] Advances and Open problems in Federated Learning
Edited by: Peter Kairouz and H. Brendan McMahan
Foundations and Trends in Machine Learning, 2021
[DOI] [preprint]

[ML] Bayesian Coresets: Revisiting the Nonconvex Optimization Perspective
Jacky Y. Zhang, Rajiv Khanna, Anastasios Kyrillidis and Oluwasanmi Koyejo
International Conference on Artificial Intelligence and Statistics (AISTATS), 2021 (Oral)
[preprint]

[ML] Enjoy Your Editing: Controllable GANs for Image Editing via Latent Space Navigation
Peiye Zhuang, Oluwasanmi O Koyejo, Alex Schwing
International Conference on Learning Representations (ICLR), 2021
[url]

[ML, BI] Learning to Recover Sharp Detail from Simulated Low-Dose CT Studies
Patrick Cole, Ayis Pyrros, Oluwasanmi Koyejo
International Symposium on Biomedical Imaging (ISBI), 2021
[url]

[ML, BI] Labeling Cost-Sensitive Batch Active Learning for Brain Tumor Segmentation
Maohao Shen, Jacky Zhang, Leihao Chen, Weiman Yan, Neel Jani, Brad Sutton, Oluwasanmi Koyejo
International Symposium on Biomedical Imaging (ISBI), 2021
[preprint]

[ML] Fair Performance Metric Elicitation
Gaurush Hiranandani, Harikrishna Narasimhan, Oluwasanmi Koyejo
Neural Information Processing Systems (NeurIPS), 2020
[preprint]

[ML] Fairness with Overlapping Groups
Forest Yang, Moustapha Cisse, and Sanmi Koyejo
Neural Information Processing Systems (NeurIPS), 2020
[preprint]

[ML] CSER: Communication-efficient SGD with Error Reset
Cong Xie, Shuai Zheng, Oluwasanmi Koyejo, Indranil Gupta, Mu Li, Haibin Lin
Neural Information Processing Systems (NeurIPS), 2020
[preprint]

[ML, NS] Estimating Differential Latent Variable Graphical Models with Applications to Brain Connectivity
Sen Na, Mladen Kolar, and Oluwasanmi Koyejo.
Biometrika, 2020
[preprint] [url]

[BI] Detecting Evolutionary Patterns of Cancers using Consensus Trees
Sarah Christensen, Juho Kim, Nicholas Chia, Oluwasanmi Koyejo and Mohammed El-Kebir
Bioinformatics, 2020
[preprint]

[ML, BI, NS] A generative modeling approach for interpreting population-level variability in brain structure
Ran Liu, Cem Subakan, Aishwarya H. Balwani, Jennifer D. Whitesell, Julie A. Harris, Sanmi Koyejo, and Eva Dyer
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2020
[preprint]

[ML] On the Consistency of Top-k Surrogate Losses
Forest Yang and Sanmi Koyejo
International Conference on Machine Learning (ICML), 2020
[preprint]

[ML] Zeno++: Robust Asynchronous SGD with an Arbitrary Number of Byzantine Workers
Cong Xie, Sanmi Koyejo, and Indranil Gupta
International Conference on Machine Learning (ICML), 2020
[preprint]

[ML] Optimization and Analysis of the pAp@k Metric for Recommender Systems
Gaurush Hiranandani, Warut Vijitbenjaronk, Sanmi Koyejo and Prateek Jain
International Conference on Machine Learning (ICML), 2020
[url]

[ML] Asynchronous Federated Optimization
Cong Xie, Sanmi Koyejo, and Indranil Gupta
OPT 2020 workshop, NeurIPS 2020
[preprint]

[ML] Local AdaAlter: Communication-Efficient Stochastic Gradient Descent with Adaptive Learning Rates
Cong Xie, Sanmi Koyejo, Indranil Gupta, and Haibin Lin
OPT 2020 workshop, NeurIPS 2020
[preprint]

[ML] Toward a Controllable Disentanglement Network
Zengjie Song, Oluwasanmi Koyejo and Jiangshe Zhang
IEEE Transactions on Cybernetics, 2020
[preprint]

[ML, BI, NS] Towards a Deep Network Architecture for Structured Smoothness
Haroun Habeeb and Oluwasanmi Koyejo
International Conference on Learning Representations (ICLR), 2020
[url]

[ML] Multiclass Performance Metric Elicitation
Gaurush Hiranandani, Shant Boodaghians, Ruta Mehta, and Oluwasanmi Koyejo
Neural Information Processing Systems (NeurIPS), 2019
[url]

[ML] Learning Sparse Distributions using Iterative Hard Thresholding
Jacky Y. Zhang, Rajiv Khanna, Anastasios Kyrillidis, Oluwasanmi Koyejo
Neural Information Processing Systems (NeurIPS), 2019
[preprint]

[ML, BI, NS] Synthetic Power Analyses: Empirical Evaluation and Application to Cognitive Neuroimaging
Peiye Zhuang, Bliss Chapman, Ran Li, and Sanmi Koyejo
Asilomar Conference on Signals, Systems, and Computers (Asilomar), 2019
[web]

[ML] Zeno: Distributed stochastic gradient descent with suspicion-based fault-tolerance
Cong Xie, Sanmi Koyejo, and Indranil Gupta
International Conference on Machine Learning (ICML), pages 6893-6901, 2019
[url]

[ML, NS] Partially linear additive Gaussian graphical models
Sinong Geng, Minhao Yan, Mladen Kolar, and Sanmi Koyejo.
International Conference on Machine Learning (ICML) pages 2180-2190, 2019
[url]

[ML] Fall of empires: Breaking byzantine-tolerant SGD by inner product manipulation
Cong Xie, Sanmi Koyejo, and Indranil Gupta
Conference on Uncertainty in Artificial Intelligence (UAI), 2019
[preprint]

[ML, NS] Joint nonparametric precision matrix estimation with confounding
Sinong Geng, Mladen Kolar, and Sanmi Koyejo.
Uncertainty in Artificial Intelligence (UAI), 2019
[preprint]

[ML] Practical distributed learning: Secure machine learning with communication-efficient local updates
Cong Xie, Oluwasanmi Koyejo, and Indranil Gupta
European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), 2019
[preprint]

[ML, BI, NS] FMRI data augmentation via synthesis
Peiye Zhuang Alexander Schwing and Oluwasanmi Koyejo
International Symposium on Biomedical Imaging (ISBI), 2019
[preprint]

[ML, BI] Max-sliced wasserstein distance and its use for GANs
Ishan Deshpande, Yuan-Ting Hu, Ruoyu Sun, Ayis Pyrros, Sanmi Koyejo, Zhizhen Zhao, David Forsyth, and Alexander Schwing
Conference on Computer Vision and Pattern Recognition (CVPR), 2019
[preprint]

[ML] Towards Realistic Individual Recourse and Actionable Explanations in Black-Box Decision Making Systems
Shalmali Joshi, Oluwasanmi Koyejo, Warut Vijitbenjaronk, Been Kim and Joydeep Ghosh
International Conference on Learning Representations; Workshop on Safe ML, 2019
[url]

[ML] Aggregation for Sensitive Data
Avradeep Bhowmik, Joydeep Ghosh, and Oluwasanmi Koyejo
13th International conference on Sampling Theory and Applications (SampTA), 2019
[url]

[ML, NS] Dependent relevance determination for smooth and structured sparse regression
Anqi Wu, Oluwasanmi Koyejo, and Jonathan Pillow
Journal of Machine Learning Research, 20:89:1-89:43, 2019
[url]

[ML] Performance metric elicitation from pairwise classifier comparisons
Gaurush Hiranandani, Shant Boodaghians, Ruta Mehta, and Oluwasanmi Koyejo
International Conference on Artificial Intelligence and Statistics (AISTATS), 2019
[preprint]

[ML] Interpreting black box predictions using Fisher kernels
Rajiv Khanna, Been Kim, Joydeep Ghosh, and Oluwasanmi Koyejo
International Conference on Artificial Intelligence and Statistics (AISTATS), 2019
[preprint]

[NS] Human cognition involves the dynamic integration of neural activity and neuromodulatory systems
James M Shine, Michael Breakspear, Peter T Bell, Kayla Ehgoetz Martens, Richard Shine, Oluwasanmi Koyejo, Olaf Sporns, and Russell A Poldrack
Nature Neuroscience, 2019
[url]

[ML] Clustered monotone transforms for rating factorization
Raghav Somani, Gaurush Hiranandani, Oluwasanmi Koyejo, and Sreangsu Acharyya
ACM International Conference on Web Search and Data Mining (WSDM), 2019
[preprint] [code]

[ML] Clustered Fused Graphical Lasso
Yizhi Zhu and Oluwasanmi Koyejo
Conference on Uncertainty in Artificial Intelligence (UAI), 2018
[pdf]

[ML] Binary Classification with Karmic, Threshold-Quasi-Concave Metrics
Bowei Yan, Oluwasanmi Koyejo, Kai Zhong and Pradeep Ravikumar
International Conference on Machine Learning (ICML), 2018
[url]

[NS, ML] Bayesian structure learning for dynamic brain connectivity
Michael Riis Andersen, Lars Kai Hansen, Ole Winther, Russell A. Poldrack, and Oluwasanmi Koyejo
International conference on Artificial Intelligence and Statistics (AISTATS), 2018
[url]

[NS, BI] MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites
Oscar Esteban, Daniel Birman, Marie Schaer, Oluwasanmi O Koyejo, Russell A Poldrack, and Krzysztof J Gorgolewski
PLoS One, 12(9):e0184661, 2017
[url] [preprint] [code]

[NS] Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition
Timothy N Rubin, Oluwasanmi Koyejo, Krzysztof J Gorgolewski, Michael N Jones, Russell A Poldrack, and Tal Yarkoni
PLOS Computational Biology, 2017
[preprint]

[ML] Consistency Analysis for Binary Classification Revisited
Krzysztof Dembczynski, Wojciech Kotlowski, Oluwasanmi Koyejo, and Nagarajan Natarajan
International Conference on Machine Learning (ICML), 2017
[url]

[NS, ML] False Discovery Rate Smoothing
Wesley Tansey, Oluwasanmi Koyejo, Russell A. Poldrack and James G. Scott
Journal of the American Statistical Association (JASA): Theory and Methods, 2017
[preprint] [code]

[ML] Frequency Domain Predictive Modeling with Aggregated Data
Avradeep Bhowmik, Joydeep Ghosh, Oluwasanmi Koyejo
Proceedings of the 20th International conference on Artificial Intelligence and Statistics (AISTATS), 2017
[url]

[ML, NS] Information Projection and Approximate Inference for Structured Sparse Variables
Rajiv Khanna, Joydeep Ghosh, Rusell Poldrack, Oluwasanmi Koyejo
Proceedings of the 20th International conference on Artificial Intelligence and Statistics (AISTATS), 2017
[url] [preprint]

[ML, NS] A Deflation Method for Structured Probabilistic PCA
Rajiv Khanna, Joydeep Ghosh, Russell A. Poldrack, and Oluwasanmi Koyejo
Proceedings of the SIAM International Conference on Data Mining (SDM), 2017
[pdf]

[NS, ML] What's in a pattern? Examining the Type of Signal Multivariate Analysis Uncovers At the Group Level
Roee Gilron, Jonathan Rosenblatt, Oluwasanmi Koyejo, Russell A. Poldrack, and Roy Mukamel
NeuroImage (2017)
[url]

[NS] The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance
J.M. Shine, P.G. Bissett, P.T. Bell, O. Koyejo, J.H. Balsters, K.J. Gorgolewski, C.A. Moodie and R. A. Poldrack
Neuron (2016)
[url] [preprint] [code]

[NS] Temporal metastates are associated with differential patterns of time-resolved connectivity, network topology, and attention
James M. Shine, Oluwasanmi Koyejo, and Russell A. Poldrack
Proceedings of the National Academy of Sciences (2016): 201604898
[url] [preprint] [code]

[ML] Examples are not Enough, Learn to Criticize! Criticism for Interpretable Machine Learning
Been Kim*, Rajiv Khanna* and Oluwasanmi Koyejo*
Advances in Neural Information Processing Systems (NIPS) 29, 2016 (Oral)
[url] [code]

[ML] Preference Completion from Partial Rankings
Suriya Gunasekar, Oluwasanmi Koyejo, and Joydeep Ghosh
Advances in Neural Information Processing Systems (NIPS) 29, 2016
[url] [code]

[NS, ML] Generalized Correspondence-LDA Models (GC-LDA) for Identifying Functional Regions in the Brain
Timothy Rubin, Oluwasanmi Koyejo, Michael Jones, and Tal Yarkoni
Advances in Neural Information Processing Systems (NIPS) 29, 2016
[url] [code]

[ML] Sparse parameter recovery from aggregated data
Avradeep Bhowmik, Joydeep Ghosh, and Oluwasanmi Koyejo
International Conference on Machine Learning (ICML), 2016
[url]

[ML] Optimal classification with multivariate losses
Nagarajan Natarajan, Oluwasanmi Koyejo, Pradeep K Ravikumar, and Inderjit S Dhillon
International Conference on Machine Learning (ICML), 2016
[url] [preprint]

[ML, NS] A simple and provable algorithm for sparse CCA
Megasthenis Asteris, Anastasios Kyrillidis, Oluwasanmi Koyejo, and Russell A Poldrack
International Conference on Machine Learning (ICML), 2016
[url] [code]

[ML] Renyi divergence minimization based co-regularized multiview clustering
Shalmali Joshi, Joydeep Ghosh, Mark Reid, and Oluwasanmi Koyejo
Machine Learning, 2016
[url]

[NS] Long-term neural, behavioral, and physiological phenotyping of a single human: The myconnectome project
R. Poldrack, T. Laumann, O. Koyejo, B. Gregory, A. Hover, M.-Y. Chen, K. Gorgolewski, J. Luci, S.J. Joo, R. Boyd, S. Hunicke-Smith, Z. Simpson, T. Caven, V. Sochat, J. Shine, E. Gordon, A. Snyder, B. Adeyemo, S. Petersen, D. Glahn, D. McKay, J. Curran, H. Goring, M. Carless, J. Blangero, R. Dougherty, A. Leemans, D. Handwerker, L. Frick, E. Marcotte, J. Mumford
Nature Communications, 2015
[url] [web] [code]

[ML] Consistent multilabel classification
Oluwasanmi Koyejo*, Nagarajan Natarajan*, Pradeep Ravikumar, and Inderjit Dhillon
Advances in Neural Information Processing Systems (NIPS) 28, 2015
[url]

[NS] Effects of thresholding on correlation-based image similarity metrics
Vanessa V Sochat, Krzysztof J. Gorgolewski, Oluwasanmi Koyejo, Joke Durnez and Russell A Poldrack
Frontiers in Neuroscience, 9:418, 2015
[url] [code]

[ML] Simultaneous prognosis and exploratory analysis of multiple chronic conditions using clinical notes
Shalmali Joshi, Oluwasanmi Koyejo, Kristine Resurreccion, and Joydeep Ghosh
IEEE International Conference on Healthcare Informatics 2015 (ICHI 2015), 2015
[url]

[NS, ML] Estimation of dynamic functional connectivity using multiplicative analytical coupling
James M Shine, Oluwasanmi Koyejo, Peter T Bell, Krzysztov J Gorgolewski, Moran Gilat, and Russell A Poldrack
NeuroImage, 122:399-407, 2015
[url] [code]

[ML] Generalized linear models for aggregated data
Avradeep Bhowmik, Joydeep Ghosh, and Oluwasanmi Koyejo
Proceedings of the 18th International conference on Artificial Intelligence and Statistics (AISTATS), 2015 (Oral)
[url]

[ML, NS] Sparse submodular probabilistic PCA
Rajiv Khanna, Joydeep Ghosh, Russell A. Poldrack, and Oluwasanmi Koyejo
Proceedings of the 18th International conference on Artificial Intelligence and Statistics (AISTATS), 2015 (Oral)
[url]

[ML] Consistent binary classification with generalized performance metrics
Oluwasanmi Koyejo*, Nagarajan Natarajan*, Pradeep Ravikumar, and Inderjit Dhillon
Advances in Neural Information Processing Systems (NIPS) 27, 2014 (Spotlight)
[url]

[ML, NS] On prior distributions and approximate inference for structured variables
Oluwasanmi Koyejo, Rajiv Khanna, Joydeep Ghosh, and Russell A Poldrack
Advances in Neural Information Processing Systems (NIPS) 27, 2014
[url]

[ML, NS] Sparse dependent Bayesian structure learning
Anqi Wu, Mijung Park, Oluwasanmi Koyejo, and Jonathan Pillow
Advances in Neural Information Processing Systems (NIPS) 27, 2014
[url]

[ML] A constrained matrix-variate Gaussian process for transposable data
Oluwasanmi Koyejo, Cheng Lee, and Joydeep Ghosh
Machine Learning, 2014
[url] [preprint]

[ML, NS] Constrained Bayesian inference for low rank multitask learning
Oluwasanmi Koyejo and Joydeep Ghosh
Proceedings of the 29th conference on Uncertainty in artificial intelligence (UAI), 2013
Awarded Amazon best student paper
[pdf] [preprint]

[NS] Towards open sharing of task-based fMRI data: The OpenfMRI project
R. A. Poldrack, D. M. Barch, J. P. Mitchell, T. D. Wager, A. D. Wagner, J. T. Devlin, C. Cumba, O. Koyejo, and M. P. Milham
Frontiers in Neuroinformatics, 2013
[url] [web]

[ML, NS] Bayesian structure learning for functional neuroimaging
Mijung Park*, Oluwasanmi Koyejo*, Joydeep Ghosh, Russell A. Poldrack, and Jonathan W. Pillow
International Conference on Artificial Intelligence and Statistics (AISTATS), 2013
[url]

[ML] Identifying candidate disease genes using a trace norm constrained bipartite ranking model
Cheng Lee, Oluwasanmi Koyejo, and Joydeep Ghosh
Engineering in Medicine and Biology Society (EMBC), 2013
[pdf]

[ML, NS] Learning predictive cognitive structure from fMRI using supervised topic models
Oluwasanmi Koyejo, Priyank Patel, Joydeep Ghosh, and Russell A. Poldrack
International Workshop on Pattern Recognition in NeuroImaging (PRNI), 2013
[pdf]

[ML] Retargeted matrix factorization for collaborative filtering
Oluwasanmi Koyejo, Sreangsu Acharyya, and Joydeep Ghosh
Proceedings of the 7th ACM conference on Recommender systems (RecSys ’13). ACM, New York, NY, USA, 49-56
[url]

[ML] Constrained Gaussian Process Regression for Gene-Disease Association
Oluwasanmi Koyejo, Cheng Lee, and Joydeep Ghosh
ICDM Workshop on Biological Data Mining and its Applications in Healthcare, 2013
[url]

[ML, NS] Decoding cognitive processes from functional MRI
Oluwasanmi Koyejo and Russell A. Poldrack
NIPS Workshop on Machine Learning and Interpretation in Neuroimaging, 2013
[pdf]

[ML] Learning to rank with Bregman divergences and monotone retargeting
Sreangsu Acharyya*, Oluwasanmi Koyejo*, and Joydeep Ghosh
Proceedings of the 28th conference on Uncertainty in artificial intelligence (UAI), 2012
[pdf] [preprint]

[ML] A kernel-based approach to exploiting interaction-networks in heterogeneous information sources for improved recommender systems
Oluwasanmi Koyejo, and Joydeep Ghosh
Proceedings of the 2nd International Workshop on Information Heterogeneity and Fusion in Recommender Systems (HETREC). ACM, 2011
[pdf]

[ML] MiPPS; a generative model for multi-manifold clustering. In AAAI Fall Symposium on Manifold Learning and Its Applications
Oluwasanmi Koyejo and Joydeep Ghosh
AAAI Fall Symposium on Manifold Learning and Its Applications. AAAI Press, 2009
[pdf]

Thesis

Constrained relative entropy minimization with applications to multitask learning
Oluwasanmi Koyejo
University of Texas at Austin, 2013
[url]

See CV for other publications and materials.